Resume a stopped protein design run
Resume a stopped protein design run from its last checkpoint
ReturnsExpand Collapse
type ProteinDesignResumeResponse struct{…}A protein design pipeline run that generates novel protein binders
A protein design pipeline run that generates novel protein binders
When the input, output, and result data was permanently deleted. Null if data has not been deleted.
Deprecated. Use pipeline_version instead.
Input ProteinDesignResumeResponseInputPipeline input (null if data deleted)
Pipeline input (null if data deleted)
BinderSpecification ProteinDesignResumeResponseInputBinderSpecificationUnionBinder specification for protein design. Use no_template for sequence-defined binders, structure_template for uploaded binder structures, boltz_curated for Boltz-managed nanobody and antibody defaults, or uniformly_sampled_specifications to sample uniformly across multiple binder specifications.
Binder specification for protein design. Use no_template for sequence-defined binders, structure_template for uploaded binder structures, boltz_curated for Boltz-managed nanobody and antibody defaults, or uniformly_sampled_specifications to sample uniformly across multiple binder specifications.
type ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponse struct{…}Binder specification starting from an existing 3D structure. Upload a CIF/PDB file and select which chains to include, which residues to keep, and which regions to redesign. Only chains included in chain_selection are part of the pipeline run.
Binder specification starting from an existing 3D structure. Upload a CIF/PDB file and select which chains to include, which residues to keep, and which regions to redesign. Only chains included in chain_selection are part of the pipeline run.
ChainSelection map[string, ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionUnion]Chains selected from the uploaded binder structure, keyed by chain ID. Only chains listed here are included in the pipeline run — any chains omitted from this mapping are ignored. Each value defines which residues to keep (crop_residues). Omit design_motifs to include the chain as fixed scaffold context.
Chains selected from the uploaded binder structure, keyed by chain ID. Only chains listed here are included in the pipeline run — any chains omitted from this mapping are ignored. Each value defines which residues to keep (crop_residues). Omit design_motifs to include the chain as fixed scaffold context.
type ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpec struct{…}Per-chain crop and design specification for a polymer chain in structure_template mode.
Per-chain crop and design specification for a polymer chain in structure_template mode.
CropResidues ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecCropResiduesUnion0-indexed residue indices to retain from this chain, or ‘all’ to keep all residues. Residues not listed are removed before design.
0-indexed residue indices to retain from this chain, or ‘all’ to keep all residues. Residues not listed are removed before design.
DesignMotifs []ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecDesignMotifUnionOptionalOptional motifs (replacement or insertion) defining which regions to redesign on this chain. Omit this field to include the chain as fixed scaffold context.
Optional motifs (replacement or insertion) defining which regions to redesign on this chain. Omit this field to include the chain as fixed scaffold context.
type ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecDesignMotifReplacementMotif struct{…}Replace a contiguous region of the sequence with a designed segment. Residues from start_index to end_index (inclusive) are replaced with a new sequence of the specified length.
Replace a contiguous region of the sequence with a designed segment. Residues from start_index to end_index (inclusive) are replaced with a new sequence of the specified length.
type ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecDesignMotifInsertionMotif struct{…}Insert a designed segment at a specific position in the sequence.
Insert a designed segment at a specific position in the sequence.
0-indexed position after which to insert. Use -1 to insert before the first residue.
Modality ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseModality
Structure ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseStructure
Rules ProteinDesignResumeResponseInputBinderSpecificationStructureTemplateBinderSpecResponseRulesOptionalConstraints applied during sequence design
Constraints applied during sequence design
Single-letter amino acid codes to exclude from design (e.g. [‘C’, ‘P’] to exclude cysteine and proline)
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponse struct{…}Binder specification without a structural template. Define the binder from sequence components (fixed and designed segments) without providing a starting 3D structure.
Binder specification without a structural template. Define the binder from sequence components (fixed and designed segments) without providing a starting 3D structure.
Entities []ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseEntityUnionBinder entities composing the design. At least one must be a designed_protein entity. Additional fixed entities (RNA, DNA, ligands) can be included as part of the complex.
Binder entities composing the design. At least one must be a designed_protein entity. Additional fixed entities (RNA, DNA, ligands) can be included as part of the complex.
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseEntityDesignedProteinEntityResponse struct{…}Protein binder entity with designed and/or fixed segments.
Protein binder entity with designed and/or fixed segments.
Binder sequence specification. Fixed amino acids are written as literal single-letter codes. Designed regions are written as a length (fixed) or a length range (min..max). Example: “MKTAYI5..10VKSHFSRQ” means fixed MKTAYI, then 5-10 designed residues, then fixed VKSHFSRQ. “20” means 20 fully designed residues. “ACDE8GHI” means fixed ACDE, then 8 designed residues, then fixed GHI.
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseEntityFixedProteinEntityResponse struct{…}A fixed protein entity whose sequence is not redesigned.
A fixed protein entity whose sequence is not redesigned.
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseEntityFixedRnaEntityResponse struct{…}
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseEntityFixedDnaEntityResponse struct{…}
Modality ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseModality
Bonds []ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseBondOptionalCovalent bond constraints between atoms in the binder complex. If defining bonds where an atom is part of a designed protein chain, assume residue indices count designed regions as the minimum length. Example: designed protein “1..3C1..2”, “C” is residue 1 (0-indexed) of the designed protein.
Covalent bond constraints between atoms in the binder complex. If defining bonds where an atom is part of a designed protein chain, assume residue indices count designed regions as the minimum length. Example: designed protein “1..3C1..2”, “C” is residue 1 (0-indexed) of the designed protein.
Atom1 ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseBondAtom1UnionLigand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseBondAtom1LigandAtomResponse struct{…}Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Atom2 ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseBondAtom2UnionLigand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseBondAtom2LigandAtomResponse struct{…}Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Rules ProteinDesignResumeResponseInputBinderSpecificationNoTemplateBinderSpecResponseRulesOptionalConstraints applied during sequence design
Constraints applied during sequence design
Single-letter amino acid codes to exclude from design (e.g. [‘C’, ‘P’] to exclude cysteine and proline)
type ProteinDesignResumeResponseInputBinderSpecificationBoltzCuratedBinderSpecResponse struct{…}Boltz-managed curated binder specification. Choose a curated nanobody or antibody family and Boltz will select from maintained template lists during design. The curated lists are managed by Boltz and may be updated over time to improve quality and coverage.
Boltz-managed curated binder specification. Choose a curated nanobody or antibody family and Boltz will select from maintained template lists during design. The curated lists are managed by Boltz and may be updated over time to improve quality and coverage.
Binder ProteinDesignResumeResponseInputBinderSpecificationBoltzCuratedBinderSpecResponseBinderBoltz-managed curated binder family. Boltz maintains and may update the underlying template lists on behalf of customers.
Boltz-managed curated binder family. Boltz maintains and may update the underlying template lists on behalf of customers.
Rules ProteinDesignResumeResponseInputBinderSpecificationBoltzCuratedBinderSpecResponseRulesOptionalConstraints applied during sequence design
Constraints applied during sequence design
Single-letter amino acid codes to exclude from design (e.g. [‘C’, ‘P’] to exclude cysteine and proline)
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponse struct{…}A collection of binder specifications sampled uniformly during protein design. This lets one run explore multiple binder definitions while keeping each generation request shape unchanged.
A collection of binder specifications sampled uniformly during protein design. This lets one run explore multiple binder definitions while keeping each generation request shape unchanged.
BinderSpecifications []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationUnionBinder specifications to sample uniformly when generating designs. Each generation samples one specification from this list; over larger runs this gives roughly equal representation.
Binder specifications to sample uniformly when generating designs. Each generation samples one specification from this list; over larger runs this gives roughly equal representation.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponse struct{…}Binder specification starting from an existing 3D structure. Upload a CIF/PDB file and select which chains to include, which residues to keep, and which regions to redesign. Only chains included in chain_selection are part of the pipeline run.
Binder specification starting from an existing 3D structure. Upload a CIF/PDB file and select which chains to include, which residues to keep, and which regions to redesign. Only chains included in chain_selection are part of the pipeline run.
ChainSelection map[string, ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionUnion]Chains selected from the uploaded binder structure, keyed by chain ID. Only chains listed here are included in the pipeline run — any chains omitted from this mapping are ignored. Each value defines which residues to keep (crop_residues). Omit design_motifs to include the chain as fixed scaffold context.
Chains selected from the uploaded binder structure, keyed by chain ID. Only chains listed here are included in the pipeline run — any chains omitted from this mapping are ignored. Each value defines which residues to keep (crop_residues). Omit design_motifs to include the chain as fixed scaffold context.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpec struct{…}Per-chain crop and design specification for a polymer chain in structure_template mode.
Per-chain crop and design specification for a polymer chain in structure_template mode.
CropResidues ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecCropResiduesUnion0-indexed residue indices to retain from this chain, or ‘all’ to keep all residues. Residues not listed are removed before design.
0-indexed residue indices to retain from this chain, or ‘all’ to keep all residues. Residues not listed are removed before design.
DesignMotifs []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecDesignMotifUnionOptionalOptional motifs (replacement or insertion) defining which regions to redesign on this chain. Omit this field to include the chain as fixed scaffold context.
Optional motifs (replacement or insertion) defining which regions to redesign on this chain. Omit this field to include the chain as fixed scaffold context.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecDesignMotifReplacementMotif struct{…}Replace a contiguous region of the sequence with a designed segment. Residues from start_index to end_index (inclusive) are replaced with a new sequence of the specified length.
Replace a contiguous region of the sequence with a designed segment. Residues from start_index to end_index (inclusive) are replaced with a new sequence of the specified length.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplatePolymerChainSpecDesignMotifInsertionMotif struct{…}Insert a designed segment at a specific position in the sequence.
Insert a designed segment at a specific position in the sequence.
0-indexed position after which to insert. Use -1 to insert before the first residue.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseChainSelectionStructureTemplateLigandChainSpec struct{…}Per-chain specification for a ligand chain in structure_template mode. The full ligand is always included.
Per-chain specification for a ligand chain in structure_template mode. The full ligand is always included.
Modality ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseModality
Structure ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseStructure
Rules ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationStructureTemplateBinderSpecResponseRulesOptionalConstraints applied during sequence design
Constraints applied during sequence design
Single-letter amino acid codes to exclude from design (e.g. [‘C’, ‘P’] to exclude cysteine and proline)
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponse struct{…}Binder specification without a structural template. Define the binder from sequence components (fixed and designed segments) without providing a starting 3D structure.
Binder specification without a structural template. Define the binder from sequence components (fixed and designed segments) without providing a starting 3D structure.
Entities []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityUnionBinder entities composing the design. At least one must be a designed_protein entity. Additional fixed entities (RNA, DNA, ligands) can be included as part of the complex.
Binder entities composing the design. At least one must be a designed_protein entity. Additional fixed entities (RNA, DNA, ligands) can be included as part of the complex.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityDesignedProteinEntityResponse struct{…}Protein binder entity with designed and/or fixed segments.
Protein binder entity with designed and/or fixed segments.
Binder sequence specification. Fixed amino acids are written as literal single-letter codes. Designed regions are written as a length (fixed) or a length range (min..max). Example: “MKTAYI5..10VKSHFSRQ” means fixed MKTAYI, then 5-10 designed residues, then fixed VKSHFSRQ. “20” means 20 fully designed residues. “ACDE8GHI” means fixed ACDE, then 8 designed residues, then fixed GHI.
Modifications []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityDesignedProteinEntityResponseModificationOptionalOptional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
Optional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedProteinEntityResponse struct{…}A fixed protein entity whose sequence is not redesigned.
A fixed protein entity whose sequence is not redesigned.
Modifications []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedProteinEntityResponseModificationOptionalOptional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
Optional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedRnaEntityResponse struct{…}
Modifications []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedRnaEntityResponseModificationOptionalOptional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
Optional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedDnaEntityResponse struct{…}
Modifications []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedDnaEntityResponseModificationOptionalOptional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
Optional CCD polymer modifications. Defaults to [] when omitted. SMILES modifications are not supported.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseEntityFixedLigandSmilesEntityResponse struct{…}
Modality ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseModality
Bonds []ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseBondOptionalCovalent bond constraints between atoms in the binder complex. If defining bonds where an atom is part of a designed protein chain, assume residue indices count designed regions as the minimum length. Example: designed protein “1..3C1..2”, “C” is residue 1 (0-indexed) of the designed protein.
Covalent bond constraints between atoms in the binder complex. If defining bonds where an atom is part of a designed protein chain, assume residue indices count designed regions as the minimum length. Example: designed protein “1..3C1..2”, “C” is residue 1 (0-indexed) of the designed protein.
Atom1 ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseBondAtom1UnionLigand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseBondAtom1LigandAtomResponse struct{…}Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Atom2 ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseBondAtom2UnionLigand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseBondAtom2LigandAtomResponse struct{…}Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Rules ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationNoTemplateBinderSpecResponseRulesOptionalConstraints applied during sequence design
Constraints applied during sequence design
Single-letter amino acid codes to exclude from design (e.g. [‘C’, ‘P’] to exclude cysteine and proline)
type ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationBoltzCuratedBinderSpecResponse struct{…}Boltz-managed curated binder specification. Choose a curated nanobody or antibody family and Boltz will select from maintained template lists during design. The curated lists are managed by Boltz and may be updated over time to improve quality and coverage.
Boltz-managed curated binder specification. Choose a curated nanobody or antibody family and Boltz will select from maintained template lists during design. The curated lists are managed by Boltz and may be updated over time to improve quality and coverage.
Binder ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationBoltzCuratedBinderSpecResponseBinderBoltz-managed curated binder family. Boltz maintains and may update the underlying template lists on behalf of customers.
Boltz-managed curated binder family. Boltz maintains and may update the underlying template lists on behalf of customers.
Rules ProteinDesignResumeResponseInputBinderSpecificationUniformlySampledBinderSpecResponseBinderSpecificationBoltzCuratedBinderSpecResponseRulesOptionalConstraints applied during sequence design
Constraints applied during sequence design
Single-letter amino acid codes to exclude from design (e.g. [‘C’, ‘P’] to exclude cysteine and proline)
Number of protein designs to generate. Must be between 10 and 1,000,000.
Target ProteinDesignResumeResponseInputTargetUnionTarget specification (structure template or template-free)
Target specification (structure template or template-free)
type ProteinDesignResumeResponseInputTargetStructureTemplateTargetResponse struct{…}Target defined by an uploaded 3D structure (CIF or PDB file). Only chains included in chain_selection are used.
Target defined by an uploaded 3D structure (CIF or PDB file). Only chains included in chain_selection are used.
ChainSelection map[string, ProteinDesignResumeResponseInputTargetStructureTemplateTargetResponseChainSelectionUnion]Chains selected from the uploaded structure, keyed by chain ID. Only chains listed here are included in the pipeline run — any chains omitted from this mapping are ignored. Each value defines which residues to keep, which are epitope residues, which are non-binding residues, and which are flexible.
Chains selected from the uploaded structure, keyed by chain ID. Only chains listed here are included in the pipeline run — any chains omitted from this mapping are ignored. Each value defines which residues to keep, which are epitope residues, which are non-binding residues, and which are flexible.
type ProteinDesignResumeResponseInputTargetStructureTemplateTargetResponseChainSelectionStructureTemplateTargetPolymerChainSpec struct{…}Per-chain specification for a polymer (protein/RNA/DNA) chain in a structure template target.
Per-chain specification for a polymer (protein/RNA/DNA) chain in a structure template target.
CropResidues ProteinDesignResumeResponseInputTargetStructureTemplateTargetResponseChainSelectionStructureTemplateTargetPolymerChainSpecCropResiduesUnion0-indexed residue indices to retain from this chain, or ‘all’ to keep all residues. Residues not listed are excluded from the pipeline run.
0-indexed residue indices to retain from this chain, or ‘all’ to keep all residues. Residues not listed are excluded from the pipeline run.
0-indexed residue indices where binder contact is desired (the epitope). All indices must be present in crop_residues and must not overlap non_binding_residues.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponse struct{…}Target defined by sequences only, without a 3D structure template
Target defined by sequences only, without a 3D structure template
Entities []ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseEntityUnionEntities (proteins, RNA, DNA, ligands) defining the target complex.
Entities (proteins, RNA, DNA, ligands) defining the target complex.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseEntityProteinEntityResponse struct{…}
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseEntityRnaEntityResponse struct{…}
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseEntityDnaEntityResponse struct{…}
Bonds []ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseBondOptionalCovalent bond constraints between atoms in the target complex. Ligand atom references support CCD atom names and explicitly atom-mapped SMILES atoms.
Covalent bond constraints between atoms in the target complex. Ligand atom references support CCD atom names and explicitly atom-mapped SMILES atoms.
Atom1 ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseBondAtom1UnionLigand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseBondAtom1LigandAtomResponse struct{…}Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Atom2 ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseBondAtom2UnionLigand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseBondAtom2LigandAtomResponse struct{…}Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand atom reference for a CCD atom or an explicitly atom-mapped SMILES atom.
Constraints []ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintUnionOptionalStructural constraints (pocket and contact). Ligand atom references support CCD atom names and explicitly atom-mapped SMILES atoms.
Structural constraints (pocket and contact). Ligand atom references support CCD atom names and explicitly atom-mapped SMILES atoms.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintPocketConstraintResponse struct{…}Constrains the binder to interact with specific pocket residues on the target.
Constrains the binder to interact with specific pocket residues on the target.
Binding pocket residues keyed by chain ID. Each key is a chain ID (e.g. “A”) and the value is an array of 0-indexed residue indices that define the pocket on that chain.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponse struct{…}Maximum-distance contact constraint between two polymer residues or ligand atoms.
Maximum-distance contact constraint between two polymer residues or ligand atoms.
Token1 ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponseToken1UnionLigand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponseToken1PolymerContactTokenResponse struct{…}
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponseToken1LigandContactTokenResponse struct{…}Ligand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
Token2 ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponseToken2UnionLigand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponseToken2PolymerContactTokenResponse struct{…}
type ProteinDesignResumeResponseInputTargetNoTemplateTargetResponseConstraintContactConstraintResponseToken2LigandContactTokenResponse struct{…}Ligand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
Ligand contact token for a CCD atom or an explicitly atom-mapped SMILES atom.
Chain IDs of ligand entities that are part of the binding epitope. Ligands are marked as epitope in full (no residue-level selection).
Resume a stopped protein design run
package main
import (
"context"
"fmt"
"github.com/boltz-bio/boltz-api-go"
"github.com/boltz-bio/boltz-api-go/option"
)
func main() {
client := boltzapi.NewClient(
option.WithAPIKey("My API Key"),
)
response, err := client.Protein.Design.Resume(context.TODO(), "id")
if err != nil {
panic(err.Error())
}
fmt.Printf("%+v\n", response.ID)
}
{
"id": "id",
"completed_at": "2019-12-27T18:11:19.117Z",
"created_at": "2019-12-27T18:11:19.117Z",
"data_deleted_at": "2019-12-27T18:11:19.117Z",
"engine": "boltzprot",
"engine_version": "1.0",
"error": {
"code": "code",
"message": "message",
"details": {}
},
"input": {
"binder_specification": {
"chain_selection": {
"B": {
"chain_type": "polymer",
"crop_residues": [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9
],
"design_motifs": [
{
"design_length_range": {
"max": 8,
"min": 4
},
"end_index": 5,
"start_index": 0,
"type": "replacement"
}
]
}
},
"modality": "peptide",
"structure": {
"url": "https://example.com",
"url_expires_at": "2019-12-27T18:11:19.117Z"
},
"type": "structure_template",
"rules": {
"excluded_amino_acids": [
"x"
],
"excluded_sequence_motifs": [
"string"
],
"max_hydrophobic_fraction": 0
}
},
"num_proteins": 10,
"target": {
"chain_selection": {
"A": {
"chain_type": "polymer",
"crop_residues": [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12
],
"epitope_residues": [
10,
11,
12
],
"flexible_residues": [
5,
6,
7
],
"non_binding_residues": [
0,
1,
2
]
}
},
"structure": {
"url": "https://example.com",
"url_expires_at": "2019-12-27T18:11:19.117Z"
},
"type": "structure_template"
},
"idempotency_key": "idempotency_key",
"workspace_id": "workspace_id"
},
"livemode": true,
"pipeline": "boltzprot",
"pipeline_version": "1.0",
"progress": {
"num_proteins_generated": 0,
"total_proteins_to_generate": 1,
"latest_result_id": "latest_result_id"
},
"started_at": "2019-12-27T18:11:19.117Z",
"status": "pending",
"stopped_at": "2019-12-27T18:11:19.117Z",
"workspace_id": "workspace_id",
"idempotency_key": "idempotency_key"
}Returns Examples
{
"id": "id",
"completed_at": "2019-12-27T18:11:19.117Z",
"created_at": "2019-12-27T18:11:19.117Z",
"data_deleted_at": "2019-12-27T18:11:19.117Z",
"engine": "boltzprot",
"engine_version": "1.0",
"error": {
"code": "code",
"message": "message",
"details": {}
},
"input": {
"binder_specification": {
"chain_selection": {
"B": {
"chain_type": "polymer",
"crop_residues": [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9
],
"design_motifs": [
{
"design_length_range": {
"max": 8,
"min": 4
},
"end_index": 5,
"start_index": 0,
"type": "replacement"
}
]
}
},
"modality": "peptide",
"structure": {
"url": "https://example.com",
"url_expires_at": "2019-12-27T18:11:19.117Z"
},
"type": "structure_template",
"rules": {
"excluded_amino_acids": [
"x"
],
"excluded_sequence_motifs": [
"string"
],
"max_hydrophobic_fraction": 0
}
},
"num_proteins": 10,
"target": {
"chain_selection": {
"A": {
"chain_type": "polymer",
"crop_residues": [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12
],
"epitope_residues": [
10,
11,
12
],
"flexible_residues": [
5,
6,
7
],
"non_binding_residues": [
0,
1,
2
]
}
},
"structure": {
"url": "https://example.com",
"url_expires_at": "2019-12-27T18:11:19.117Z"
},
"type": "structure_template"
},
"idempotency_key": "idempotency_key",
"workspace_id": "workspace_id"
},
"livemode": true,
"pipeline": "boltzprot",
"pipeline_version": "1.0",
"progress": {
"num_proteins_generated": 0,
"total_proteins_to_generate": 1,
"latest_result_id": "latest_result_id"
},
"started_at": "2019-12-27T18:11:19.117Z",
"status": "pending",
"stopped_at": "2019-12-27T18:11:19.117Z",
"workspace_id": "workspace_id",
"idempotency_key": "idempotency_key"
}